TRANSP Grid Analysis 12345B01 D3D trdat.log
==>runtrx_r9 start: date: Tue Mar 31 09:47:42 AM EDT 2026 ( flux-login2.pppl.gov )
argv = 2
iarg = 2
cmd_opt = pre
runtrx_r9: tok.yy = D3D.26
==========(runtrx_r9)======================
date: Tue Mar 31 09:47:42 AM EDT 2026 ( flux-login2.pppl.gov )
args: 12345B01 pre
==========(runtrx_r9)======================
==========(runtrx_r9)======================
==========TRANSP preprocessing==========
date: Tue Mar 31 09:47:42 AM EDT 2026 ( flux-login2.pppl.gov )
==========check for 12345B01_mdsmark.sh===
==========(runtrx_r9)======================
==========TRDAT execution===============
date: Tue Mar 31 09:47:42 AM EDT 2026 ( flux-login2.pppl.gov )
TRDAT
TRANSP Version: 21.X
TRANSP DOI: 10.11578/dc.20180627.4
Build Date: 2021/--/--
%trmpi_init.f90: LOG_LEVEL env. var.: 1
%trmpi_init.f90: logfile_level: warn
CTOKNM : Cdir = /scratch/shared/tr_pbonofig/transp_compute/D3D/12345B01/
% DIRECTORY IS /scratch/shared/tr_pbonofig/transp_compute/D3D/12345B01/; TOKAMAK ID SET TO D3D
%trmpi_openlog: LOGFILE_LEVEL = warn
%splitn_module: update block detected, t= 1.6960000000000000
%splitn_module: update block detected, t= 1.8000000000000000
namelist element value field(s): decimal point(s) inserted:
AMINI XVTOR_A
AEP_USCALE USER_CHI0
XZMINI
%NLIST: open namelist file12345B01TR.ZDA
%trcom_static_box: loading static data
%mds_setup: setting MDSplus server to: TRANSPGRID.PPPL.GOV
%mds_setup: server set OK.
%mds_setup: MDSplus opening tree: TRANSP_D3D 123450201
%mds_setup: MDSplus tree open status: 265389633
-----------> entering UF0GET.
%UF0DRD: DIMENSIONALITY OF INPUT FILE = 3
%OK: BTOR_CCW not found, using namelist: nlbccw = F
%OK: ITOR_CCW not found, using namelist: nljccw = F
%UF0GET -- finished.
%DATCHK: TEQ, fixed-boundary
DATCHK: CHECKING ARRAY DIMENSIONS, SWITCHES, ETC
%DATCHK: NYXINV incremented to be odd: 101 161
%DATCHK: no ECH/ECCD, NLECH=F,
%DATCHK: no Lower Hybrid, NLLH=F
%DATCHK warning: RFRAC defaulted.
%DATCKICH: TORIC-5 solver, with numerical MHD equilibrium geometry.
%DATCHK: old style ICH antenna geometry converted:
RmjIcha,rmnIcha,thIcha -> RgeoAnt,YgeoAnt
ONLY element (1) of each array used!
%DATCKICH: copy shared parameters to Antenna # 1
%DATCKA: ACfile times pre-screen...
%DATCKA -- CHECKING NON-DEFAULT SPECIFICATIONS FOR AC FILE I/O
GIVEN IN NAMELIST CHARACTER DATA ARRAYS "SELOUT" AND "SELAVG"
%ASCXFIN -- AC FILE OPERATION COMPLETED SUCCESSFULLY.
dummy trdatusub vsn trgdat_check called (OK).
dummy trdatusub vsn trgdat_psload called (OK).
*UTRCHK: CHECKING TRDAT NAMELIST SPECIFICATIONS.
%UTRCHK: TEQ, fixed-boundary
%UTRCHK - NLSAW=.T BUT NO SAWTOOTH UFILE SPECIFIED
*DDEFIN: SET UP PHYSICS DATA FOR ANALYSIS:
TIME RANGE IS TINIT= 1.6950E+00, FTIME= 3.6950E+00 SECONDS.
SETSCD - SET SCALAR DATA FOR UPF
! SAWCHK - NO SAWTOOTH EVENT TIMES FOUND,OK fixed
SETTIM - SET UP TIMING INFORMATION FOR UPF
*UF1GET: PROCESSING "CUR": plasma current amps -------------------
*UF1GET: PROCESSING "RBZ": [ext. B field] * R Tesla*cm -----------
%SETDFLT: "GAS" INPUT DATA FILE NOT SPECIFIED
==>DEFAULT VALUE SUBSTITUTED, GASFLN = 0.0000E+00
*UF1GET: PROCESSING "GFD": D gas flow source #/sec ---------------
*UF1GET: PROCESSING "VSF": surface voltage volts -----------------
*UF3GET: PROCESSING "MRY": Moments boundary cm -------------------
%CHKTIM: DATA TIME RANGE 1.6950E+00 TO 1.0745E+01 SECONDS
DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).
Setmom: Interpolate 3-D MRY bdy moments data for UPF
%SETMOM: NMOM = 12
SETLIM - SET UP Axisymmetric limiter data for UPF
*UF1GET: PROCESSING "LIM": Axisymmetric Limiter cm ---------------
%UF1GET: X axis is not the timebase, processing axis units cm
%FIXUNS: CONVERTING UFILE LIM TIMEBASE UNITS, M , TO cm
>CONVERSION FACTOR: * 100.000
%FIXUNS: CONVERTING UFILE LIM DATA UNITS, M , TO cm
>CONVERSION FACTOR: * 100.000
*UF2GET: PROCESSING "DF4": He4++ Diffusivity cm**2/sec -----------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts= 22
*UF2GET: PROCESSING "NER": electron density n/cm**3 --------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts=***
*UF2GET: PROCESSING "QPR": q profile ---------------------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts=100
*UF2GET: PROCESSING "TER": electron temperature eV ---------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts=***
*UF2GET: PROCESSING "TI2": ion temperature eV --------------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts=***
*UF2GET: PROCESSING "VC4": He4++ v(convective) cm/sec ------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts= 22
*UF2GET: PROCESSING "ZF2": Zeff profile ------------------------
%UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
1ST DIMENSION = " "; 2ND DIMENSION = "seconds "
%SETDAT2-- X axis is normalized flux, not modified, npts= 10
*DDEFIN: Set Plasma Heating parameters :- ==========================
!set AEP/RBQ operator from local disk
NAMED FILE:
/p/kick_model/pbonofig/transp/sparc/12345/12345B01/M12345.AEP
%FIXUNS: CONVERTING UFILE AEP time axis UNITS, MS , TO seconds
>CONVERSION FACTOR: *0.100000E-02
%FIXUNS: CONVERTING UFILE AEP mode time step UNITS, MS , TO seconds
>CONVERSION FACTOR: *0.100000E-02
%FIXUNS: CONVERTING UFILE AEP E axis UNITS, KEV , TO eV
>CONVERSION FACTOR: * 1000.00
%FIXUNS: CONVERTING UFILE AEP E axis UNITS, KEV , TO eV
>CONVERSION FACTOR: * 1000.00
%FIXUNS: CONVERTING UFILE AEP E axis UNITS, KEV , TO eV
>CONVERSION FACTOR: * 1000.00
%FIXUNS: CONVERTING UFILE AEP E axis UNITS, KEV , TO eV
>CONVERSION FACTOR: * 1000.00
-> entering setrfp (ICRF powers)
...setting ICRF powers from namelist
ICRF powers not stored by trdat.
%setrfp: antenna on/off times defaulted,
reset to generic ICRF on/off times: TCRFON, TCRFOF = 0.0000000000000000 100.00000000000000
...setting ICRF frequencies from namelist
not stored in trdat.
Zeff vs. (x,t) only:
Zeff vs. (x,t) input data provided.
%SETDFLT: "DTG" INPUT DATA FILE NOT SPECIFIED
==>DEFAULT VALUE SUBSTITUTED, DTMAXG = 1.0000E-02
%setmisc -- time dependent geometry timestep enabled (ZOOM is off).
%SETDFLT: "DTS" INPUT DATA FILE NOT SPECIFIED
==>DEFAULT VALUE SUBSTITUTED, DT_SOURCES = 1.0000E-02
%setmisc -- time dependent source timestep enabled (ZOOM is off).
%SETDFLT: "DTX" INPUT DATA FILE NOT SPECIFIED
==>DEFAULT VALUE SUBSTITUTED, DT_OUTPUT = 1.0000E-02
%setmisc -- time dependent output timestep enabled (ZOOM is off).
--------------------------------------------------
%trdat_bdy_check -- checking plasma boundary data
and checking plasma boundary is inside vacuum vessel
trdat_bdy_check: OK
...min(r_curvature/(Rmax-Rmin)) is: 2.6082866068214767E-002
...at time t= 3.6949999999999998 seconds.
------------> thermal ion ptcl balance summary:
Hydrogen (absent)
Deuterium NDEFINE=0 NMODEL=1 RC=Tau(p) GF=UFILE
Tritium NDEFINE=0 NMODEL=1 RC=Tau(p) GF=ZERO
Helium-3 (absent)
Helium-4 (absent)
Lithium-6 (absent)
Recycling fractions RFRAC defaulted.
------------------------------------
Fast ion summary:
Beam species: (None)
Fusion product species: He4
Minority RF species: He3
------------------------------------
COPY_PTNML_SUB: namelist: pt_template= "/p/kick_model/pbonofig/transp/sparc/12345/12345B01/ptsolver_namelist.dat"
COPY_PTNML_SUB: PT_SOLVER namelist file=
(mpi_share_env) process myid= 0 cwd: /scratch/shared/tr_pbonofig/transp_compute/D3D/12345B01
In TRDAT: calling COPY_PTNML
/p/kick_model/pbonofig/transp/sparc/12345/12345B01/ptsolver_namelist.dat
COPY_PTNML_SUB: zcmd= cp /p/kick_model/pbonofig/transp/sparc/12345/12345B01/ptsolver_namelist.dat ./12345B01_pt.nml
In TRDAT: calling COPY_TGLFNML
COPY_PTNML_SUB: file copy status (0 is normal): 0
COPY_TGLF_SUB: namelist: tglf_template= "/p/kick_model/pbonofig/transp/sparc/12345/12345B01/tglf_namelist.dat"
COPY_TGLF_SUB: TGLF namelist file=
/p/kick_model/pbonofig/transp/sparc/12345/12345B01/tglf_namelist.dat
COPY_TGLF_SUB: zcmd= cp /p/kick_model/pbonofig/transp/sparc/12345/12345B01/tglf_namelist.dat ./12345B01_tglf.nml
COPY_TGLF_SUB: file copy status (0 is normal): 0
==========(runtrx_r9 TRDAT sts = 0)======
==>runtrx_r9: trdat execution successful
will write to mdsplus later
==========LABEL execution===============
date: Tue Mar 31 09:47:43 AM EDT 2026 ( flux-login2.pppl.gov )
==>runtrx_r9: label execution successful
==========add TF.PLN to MDSplus ========
==========(runtrx_r9)======================
date: Tue Mar 31 09:47:44 AM EDT 2026 ( flux-login2.pppl.gov )
************************************************************************
Program: mds_start
Version: v0.6.0
Revision: 673c23d
Date: 02/11/2026
************************************************************************
mds_conopn: option = 4 123450201 TRANSP_D3D
...connecting to server: TRANSPGRID.PPPL.GOV
...tcl("EDIT TRANSP_D3D/SHOT=123450201")
nid = 1
open 12345B01TF.PLN
add_file: 7851 lines - 71
tcl("WRITE")
stat = 1
chmod: changing permissions of '/p/transpgrid/mds_trees/transp_d3d/transp_d3d_123450201.tree': Operation not permitted
==========add PH.CDF to MDSplus ========
==========(runtrx_r9)======================
date: Tue Mar 31 09:47:44 AM EDT 2026 ( flux-login2.pppl.gov )
==>runtrx_r9: LINK_ON_HOST environment variable detected.
==========(runtrx_r9)======================
==========>runtrx_r9 normal exit<==========
date: Tue Mar 31 09:47:44 AM EDT 2026 ( flux-login2.pppl.gov )