TRANSP Grid Analysis 204106S35 NSTU tr.tail
==> exiting nubeam_step_child, mpi myidd = 0
nubeam_load_state...
nubeam_step: levmod_halo= 0
[flux-node10:3451083:0:3451083] Caught signal 11 (Segmentation fault: address not mapped to object at address 0xfffffffc1bf65548)
==== backtrace (tid:3451083) ====
0 0x000000000003fb30 __GI___sigaction() :0
1 0x00000000019eaa02 __sep_interp_MOD_boxi_interp() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/separatrix/sepinterp.f90:738
2 0x00000000018c628f __source_mod_MOD_s_get_flux() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_source.f90:1511
3 0x00000000018fd3dc __source_mod_MOD_s_source_inv() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_source.f90:1623
4 0x000000000193cffd __inv_mod_MOD_teq_inv() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_inv.f90:1732
5 0x000000000185b8aa c_teq_find_inveq_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/c_teqface.c:39
6 0x0000000001814f28 __teqface_MOD_fix_run() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqface.f90:988
7 0x0000000001814f28 __teqface_MOD_fix_run() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqface.f90:989
8 0x000000000181b2e0 __teqbox_MOD_teqbox_fix_run.constprop.0() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqbox.f90:920
9 0x000000000181d325 __teqbox_MOD_teqbox_run() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqbox.f90:640
10 0x0000000001476109 teq2transp_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/eqsubs/teq2transp.f90:23
11 0x000000000146e9a3 mhdeq_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/eqsubs/mhdeq.f90:294
12 0x000000000135f5d6 gframe_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/geomtr/gframe.f90:389
13 0x000000000043890c stepon_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/stepon.f90:106
14 0x00000000004359dd cotrol_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/cotrol.f90:162
15 0x000000000043fc0b master_() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/trmaster.for:56
16 0x000000000043545a main() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/freeshare/port.for:7971
17 0x000000000043545a main() /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/freeshare/port.for:7963
18 0x000000000002a610 __libc_start_call_main() ???:0
19 0x000000000002a6c0 __libc_start_main_alias_2() :0
20 0x00000000004356e5 _start() ???:0
=================================
Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
Backtrace for this error:
#0 0x147cea03fb2f in ???
#1 0x19eaa02 in __sep_interp_MOD_boxi_interp
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/separatrix/sepinterp.f90:737
#2 0x18c628e in __source_mod_MOD_s_get_flux
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_source.f90:1511
#3 0x18fd3db in __source_mod_MOD_s_source_inv
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_source.f90:1623
#4 0x193cffc in __inv_mod_MOD_teq_inv
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teq_inv.f90:1732
#5 0x185b8a9 in c_teq_find_inveq_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/c_teqface.c:39
#6 0x1814f27 in __teqface_MOD_fix_run
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqface.f90:988
#7 0x181b2df in teqbox_fix_run
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqbox.f90:920
#8 0x181d324 in __teqbox_MOD_teqbox_run
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/teq/teqbox.f90:640
#9 0x1476108 in teq2transp_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/eqsubs/teq2transp.f90:23
#10 0x146e9a2 in mhdeq_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/eqsubs/mhdeq.f90:294
#11 0x135f5d5 in gframe_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/geomtr/gframe.f90:389
#12 0x43890b in stepon_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/stepon.f90:106
#13 0x4359dc in cotrol_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/cotrol.f90:162
#14 0x43fc0a in master_
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/trcore/trmaster.for:56
#15 0x435459 in transp
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/freeshare/port.for:7971
#16 0x435459 in main
_at /scratch/shared/gitlab-runner/transp/292331-d2fe9135/codesys/source/freeshare/port.for:7963
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 3451083 on node flux-node10 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
==>runtrx_r9: check for ftime_ok
ftime_ok = 0.1
==>runtrx_r9: MRK time = 0.4719751 > ftime_ok = 0.1
==>runtrx_r9: 204106S35TR.EXE processed as normal exit.
==========(runtrx_r9)======================
==========TRANSP output conversion======
date: Fri Oct 2 08:40:10 PM EDT 2026 ( flux-node10.local )
==========(runtrx_r9)====runsite=pppl.gov=================
srart tr_finish_mpi.pl false pppl.gov 204106S35 NSTU
---------------> starting: plotcon 204106S35 2026/10/02:20:40:10
%PoPlot -- reading .PLN files
%POPLT2-- PROCESSING RUN 204106S35 SHOT NO. 204106
EXPECT 713 SCALAR FCNS, 1367 PROFILE FCNS OF TIME
"MF" FILE RECORD SIZE = 40 WORDS (FLOATING PT)
dmg_datbuf_expand call from dmgini_sized: isize= 0
dmgalo dmg_datbuf_expand isize,itest= 6943447 69434470
%datmgr_mod: expanding DATBUF(...):
old size = 50000000
new size = 100000000
204106S35MF.PLN size = 214M
[mds_cache_disable: MDS+ cache disabled.]
dmg_datbuf_expand call from dmgini_sized: isize= 0
(retry folding filename to lowercase)
...reading TF.PLN header data...
cdfcon: NETcdf file datestamp : Fri Oct 2 20:40:47 2026
build_date: call getenv
build_date: call ufopen xshare_build.dat
cdfcon: Transp common build date : Fri May 3 15:19:16 EDT
Define Dimensions 11
define Scalar Fct 713
Define Multi Graphs 469
Write Profiles 1367
X 1 1 40
XB 2 2 40
THETA 3 7 80
RMJSYM 4 22 165
RMAJM 5 24 81
MCINDX 6 25 840
ILIM 7 27 33
RGRID 8 1131 101
ZGRID 9 1132 161
PSIRZ 10 1133 16261
dmgalo dmg_datbuf_expand isize,itest= 6943447 69434470
%datmgr_mod: expanding DATBUF(...):
old size = 50000000
new size = 100000000
%dmgxot_spredm: non-monotonic X axis:
#increasing steps: 1227037 avg & max steps: 1.1139E-03 4.2077E-03
#decreasing steps: 1666612 avg & max steps: 8.2012E-04 2.3197E-03
#zero steps: 4049371
B_FIELD 11 1134 48783
%dmgxot_spredm: non-monotonic X axis:
#increasing steps: ******* avg & max steps: 1.2422E-02 4.1191E-01
#decreasing steps: 6209449 avg & max steps: 2.0668E-02 1.9990E+00
#zero steps: 4352749
read NF File : 714 713
Write Multigraph: 469
...readback test of .CDF file...
2551 variables, 13 dimensions 15 att
...header check SUCCESSFUL; now check data.
...check profile data...
plotcon: CDF files in /scratch/shared/flux/tr_mscottod/transp_compute/NSTU/204106S35
/scratch/shared/flux/tr_mscottod/transp_compute/NSTU/204106S35/204106S35.CDF
/scratch/shared/flux/tr_mscottod/transp_compute/NSTU/204106S35/204106S35PH.CDF
%targz_pseq: no directory: 204106S35_replay (normal exit)
%targz_solv: in /scratch/shared/flux/tr_mscottod/transp_compute/NSTU/204106S35 on host flux-node10
%targz_solv: no TGLF debug info found (normal exit)
%targz_solv: no TGLF debug info found (normal exit)
--------------->plotcon: normal exit. 2026/10/02:20:40:49
==>runtrx_r9: TRANSP postprocessing OK
==========(runtrx_r9)======================
==========TRANSP add to MDSplus ========
date: Fri Oct 2 08:40:49 PM EDT 2026 ( flux-node10.local )
==========(runtrx_r9)======================
%mdsplot: call INITPL
%mdsplot: call getenv
%mdsplot: call ufopen xshare_build.dat
%mdsplot: MDSplus controls cleared, server set to local.
mds_conopn: option = 4 2041061935 TRANSP_NSTU
...connecting to server: TRANSPGRID.PPPL.GOV
...tcl("EDIT TRANSP_NSTU/SHOT=2041061935")
dmg_datbuf_expand call from dmgini_sized: isize= 0
... reading NetCDF header data ...
cdfhrd: size(time) = 2048
cdfhrd: size(time3) = 2048
MDS 1D Put OK
MDS 2D Put OK
MDS MG Put OK
open 204106S35_nubeam_init.dat
add_file: 187 lines - 132
delete node .TRDATA
tcl("write")
...mdsplot: normal exit.
==========(runtrx_r9)======================
==========TRANSP finish and cleanup=====
date: Fri Oct 2 08:41:20 PM EDT 2026 ( flux-node10.local )
==========(runtrx_r9)======================
%finishup -I- pppl.gov production run
%finishup: copying TRANSP permanent output files to /u/tr_mscottod/transp/result/NSTU.16
acsort.py: No match.
mv 204106S35.CDF /u/tr_mscottod/transp/result/NSTU.16/204106S35.CDF
mv 204106S35ex.for /u/tr_mscottod/transp/result/NSTU.16/204106S35ex.for
mv 204106S35_mmm.nml /u/tr_mscottod/transp/result/NSTU.16/204106S35_mmm.nml
mv 204106S35_nubeam_init.dat /u/tr_mscottod/transp/result/NSTU.16/204106S35_nubeam_init.dat
mv 204106S35PH.CDF /u/tr_mscottod/transp/result/NSTU.16/204106S35PH.CDF
mv 204106S35_pt.nml /u/tr_mscottod/transp/result/NSTU.16/204106S35_pt.nml
mv 204106S35TR.DAT /u/tr_mscottod/transp/result/NSTU.16/204106S35TR.DAT
mv 204106S35TR.INF /u/tr_mscottod/transp/result/NSTU.16/204106S35TR.INF
%finishup: retaining 204106S35tr.log
mv 204106S35TR.MSG /u/tr_mscottod/transp/result/NSTU.16/204106S35TR.MSG
mv 204106S35.yml /u/tr_mscottod/transp/result/NSTU.16/204106S35.yml
rm: No match.
%finishup -I- both the GRID and the PPPL flags are set.
/p/transpgrid/lqshare/204106S35_NSTU.qarc status 0
==========(runtrx_r9)======================
==========>runtrx_r9 normal exit<==========
date: Fri Oct 2 08:41:24 PM EDT 2026 ( flux-node10.local )
==========>runtrx_r9 runsite = pppl.gov <======